PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_3550V3.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 619aa    MW: 66470.6 Da    PI: 7.097
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_3550V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.5e-06573595325
                       S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                       ++ C +f+ +  C+ G++C F H
  Pp3c5_3550V3.3.p 573 RKACIYFSTSRGCRNGSSCAFLH 595
                       678******************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.343570598IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4574596IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MATVSSLPPG FEGTVCGILP VPHATQTTVP KQARVNKKVS WASEGDLCQV RLFAAEDAPA  60
QSSIMLQDLL QAKKARFMHA LNPIVSVDLP PGFGPSSLMG VKPLVAPILP SVSWRIPECF  120
KLDPTWLVMA GEESKEVFAQ KQRENRTLEA VYPRPSAIPE SPAEPSEVQL PFDEDDSNTL  180
IIPVVPLEDD ELPEADDLPT TSGSTYKSKQ EPFSGLKSLS PPPGFLSTSM PVKPRTWFPV  240
APLENNNLSL PAHTTPAYGP PVTVNRNIIP PNGTVVQTTN MSNARTGSLG LPVRAAEGGT  300
EPDVPAAAAA AYAALQQSND TTMIDRELLI KFLTNPSMLQ SLSEKLAQNP PGNYGVVNRR  360
IPESVDHSGI GARGNGRVWN PTVTEHAKSG QRHLETAVGI TDPHMRHGYD RPPGFGAPSG  420
ANALGQAPPQ PGQGYAHPGP LTIQSLPLPN MPPPTSVGYD QSIVSGSGRP ISQRDEQYYK  480
DLISQHGKNE EDIWGAIGVP ETGNSYPGGG RPRASGLDRE KRLGSAERTE RPERTDSRAR  540
WAGREDVDMA GLSIRQGDGD QANRSGQSRG KSRKACIYFS TSRGCRNGSS CAFLHETNNA  600
ERAKRPKLEG KESNIGYR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001764994.10.0predicted protein
TrEMBLA9SFA90.0A9SFA9_PHYPA; Predicted protein
STRINGPP1S72_333V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP212968